Pairwise RNA Structural Alignment

BEAGLE is a new alignment tool exploiting a new encoding for RNA secondary structure and a substitution matrix of RNA structural elements to perform global and local alignments. Max 10 000 alignments allowed

1) Select Analysis Type

One set Two sets Search

Description: It processes all sequences in one starting set

Load an example: One Set- Two sets- Search Clear All

2) Input

Enter or paste the QUERY set of RNA sequences in a supported format :

3) Parameters

GAP INSERTION		SEQUENCE BONUS
GAP EXTENSION		GLOBAL/LOCAL